[phenixbb] Run PHENIX commands on GUI verison?

[Nathaniel Echols]

On Sat, Jun 7, 2014 at 10:24 PM, 李翔 <lixiang1642 at gmail.com> wrote:

> I currently can only access to PHENIX with my laptop which has a Windows
> system (GUI). I want to run some commands for generating restraints for my
> models such as:
> iotbx.show_distances MR.1.pdb > contacts.distances,
> phenix.secondary_structure_restraints model.pdb
>
> Is there a way I can run commands in GUI version or can I run the above
> commands in the GUI version?
>

Yes, I think you need to run a command like this:

C:\PHENIX-1.9-1692\Phenix-1.9-1692_build\setpaths.bat

which will add the path to all of the command-line executables.  This is
only partially supported, however - I can't guarantee that all of the
commands will actually work on Windows.

-Nat
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