[phenixbb] compiling phenix from source error

irees at lbl.gov irees at lbl.gov
Mon Dec 8 14:57:56 PST 2014


Hmm, this one is trickier. I will have to look at it closely. What distribution are you running?


Thanks,

Ian


—
Sent from Mailbox

On Mon, Dec 8, 2014 at 5:50 PM, Maxime Cuypers <maximecuypers at gmail.com>
wrote:

> Hi Ian,
> thanks for your suggestion, i installed the x11 headers and it passed the
> problem. however, now it gets stuck on gtk+
> the logfile claims that libxrender can not be found. strange since this
> library is now installed on my system.
> "checking for XRenderQueryExtension... no
> configure: error: *** libXrender not found. Check 'config.log' for more
> details."
> config.log enclosed from dir .../gtk+-2.10.11/
> any idea?
> thanks
> Installing gtk+...
>   log file is
> /pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/gtk+_install_log
>   getting package gtk+-2.10.11.tar.gz...
>     using /pgmax/phenix-installer-dev-1839/gui/gtk+-2.10.11.tar.gz
> Traceback (most recent call last):
>   File "./bin/install.py", line 815, in <module>
>     run(sys.argv[1:])
>   File "./bin/install.py", line 72, in __init__
>     self.install_from_source()
>   File "./bin/install.py", line 292, in install_from_source
>     log=out)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 115, in __init__
>     self.build_cctbx_dependencies()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 170, in build_cctbx_dependencies
>     self.build_wxpython_dependencies()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 440, in build_wxpython_dependencies
>     self.build_wxpython_dependencies_linux()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 541, in build_wxpython_dependencies_linux
>     self.call("./configure %s" % " ".join(gtk_config_args), log=gtk_log)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 200, in call
>     return call(args, log=log)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
> line 53, in call
>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
> RuntimeError: Call to './configure
> --prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"
> --disable-cups --without-libjpeg' failed with exit code 1
> 2014-12-08 22:32 GMT+01:00 <irees at lbl.gov>:
>> Xrender can fail for many reasons, but generally missing X11 libraries or
>> headers on your system. Can you send the log file:
>>
>>
>> /pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
>>
>> Thanks,
>> Ian
>>
>> --
>> Sent from Mailbox <https://www.dropbox.com/mailbox>
>>
>>
>> On Mon, Dec 8, 2014 at 4:30 PM, Maxime Cuypers <maximecuypers at gmail.com>
>> wrote:
>>
>>>  hi all,
>>> am getting the following error installing phenix from source dev-1839.
>>> (tried with source from 1.9-1692 with same error) am on latest kubuntu.
>>>
>>> any idea on how to debug? -see below report...
>>>
>>> PS: am compiling from source because i need a minor modification of the
>>> neutron scattering table which requires compilation.
>>>
>>> cheerios,
>>>
>>>
>>> ....
>>> Installing Xrender...
>>>   log file is
>>> /pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
>>>   getting package xrender-0.8.3.tar.gz...
>>>     using /pgmax/phenix-installer-dev-1839/gui/xrender-0.8.3.tar.gz
>>> Traceback (most recent call last):
>>>   File "./bin/install.py", line 815, in <module>
>>>     run(sys.argv[1:])
>>>   File "./bin/install.py", line 72, in __init__
>>>     self.install_from_source()
>>>   File "./bin/install.py", line 292, in install_from_source
>>>     log=out)
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 115, in __init__
>>>     self.build_cctbx_dependencies()
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 170, in build_cctbx_dependencies
>>>     self.build_wxpython_dependencies()
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 440, in build_wxpython_dependencies
>>>     self.build_wxpython_dependencies_linux()
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 507, in build_wxpython_dependencies_linux
>>>     self.build_compiled_package_simple(pkg_name=pkg, pkg_name_label=name)
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 385, in build_compiled_package_simple
>>>     log=pkg_log)
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 203, in configure_and_build
>>>     self.call("./configure %s" % " ".join(list(config_args)), log=log)
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
>>> line 200, in call
>>>     return call(args, log=log)
>>>   File
>>> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
>>> line 53, in call
>>>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
>>> rc))
>>> RuntimeError: Call to './configure
>>> --prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"'
>>> failed with exit code 1
>>>
>>> max at A7K:/pgmax/phenix-installer-dev-1839$ uname -a
>>> Linux A7K 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 17:53:56 UTC 2014
>>> x86_64 x86_64 x86_64 GNU/Linux
>>>
>>>
>>> --
>>> Dr. Maxime Cuypers
>>>
>>>
>>
> -- 
> Dr. Maxime Cuypers
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20141208/cfc3955a/attachment.htm>


More information about the phenixbb mailing list