[phenixbb] compiling phenix from source error
Maxime Cuypers
maximecuypers at gmail.com
Mon Dec 8 13:28:26 PST 2014
hi all,
am getting the following error installing phenix from source dev-1839.
(tried with source from 1.9-1692 with same error) am on latest kubuntu.
any idea on how to debug? -see below report...
PS: am compiling from source because i need a minor modification of the
neutron scattering table which requires compilation.
cheerios,
....
Installing Xrender...
log file is
/pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
getting package xrender-0.8.3.tar.gz...
using /pgmax/phenix-installer-dev-1839/gui/xrender-0.8.3.tar.gz
Traceback (most recent call last):
File "./bin/install.py", line 815, in <module>
run(sys.argv[1:])
File "./bin/install.py", line 72, in __init__
self.install_from_source()
File "./bin/install.py", line 292, in install_from_source
log=out)
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 115, in __init__
self.build_cctbx_dependencies()
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 170, in build_cctbx_dependencies
self.build_wxpython_dependencies()
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 440, in build_wxpython_dependencies
self.build_wxpython_dependencies_linux()
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 507, in build_wxpython_dependencies_linux
self.build_compiled_package_simple(pkg_name=pkg, pkg_name_label=name)
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 385, in build_compiled_package_simple
log=pkg_log)
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 203, in configure_and_build
self.call("./configure %s" % " ".join(list(config_args)), log=log)
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
line 200, in call
return call(args, log=log)
File
"/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
line 53, in call
raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
RuntimeError: Call to './configure
--prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"'
failed with exit code 1
max at A7K:/pgmax/phenix-installer-dev-1839$ uname -a
Linux A7K 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 17:53:56 UTC 2014
x86_64 x86_64 x86_64 GNU/Linux
--
Dr. Maxime Cuypers
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