[phenixbb] warning: do not upgrade Mac OS yet!
Engin Özkan
eozkan at stanford.edu
Fri Oct 25 12:35:08 PDT 2013
But, no, that problem existed before the Mavericks update (with Snow
Leopard and Mountain Lion). I had learned to live with it.
Engin
On 10/25/13 1:45 PM, Petri Kursula wrote:
> What I saw were problems with phenix.refine (well-did not try anything
> else yet). The job seems to start normally (no error messages), but
> when you check the log file, nothing is happening (it remains empty or
> stops at initial steps). If you abort, close Phenix and restart it,
> the exactly same job runs just fine. I'm starting Phenix GUI from
> 'Applications', not command line.
>
> Petri
>
> ---
> Petri Kursula, PhD
> project leader, adjunct professor
> Department of Biochemistry & Biocenter Oulu, University of Oulu, Finland
> Department of Chemistry, University of Hamburg/DESY, Germany
> www.biochem.oulu.fi/kursula <http://www.biochem.oulu.fi/kursula>
> www.desy.de/~petri/research <http://www.desy.de/%7Epetri/research>
> petri.kursula at oulu.fi <mailto:petri.kursula at oulu.fi>
> ---
>
> On 25 Oct 2013, at 17:01, Nathaniel Echols <nechols at lbl.gov
> <mailto:nechols at lbl.gov>> wrote:
>
>> Only the GUI, as far as I know - although apparently there are
>> problems with the version of Python we're currently distributing, but
>> I don't think those will affect most people.
>>
>> -Nat
>>
>>
>> On Fri, Oct 25, 2013 at 7:37 AM, Bosch, Juergen <jubosch at jhsph.edu
>> <mailto:jubosch at jhsph.edu>> wrote:
>>
>> is this warning only for the GUI or also the CLI ?
>> Thanks,
>>
>> Jürgen
>>
>> On Oct 25, 2013, at 10:22 AM, Nathaniel Echols wrote:
>>
>>> There is some kind of strange issue with wxPython on the new Mac
>>> OS ("Mavericks"), which for at least the 1.8.4 version prevents
>>> Phenix application windows (but not the main GUI) from opening.
>>> It is also printing out an extraordinary number of warning
>>> messages about fonts to the console. I'm hoping there is a
>>> simple solution (which seems likely, since 1.8.2 is mostly okay
>>> despite using the same version of wxPython), but until we figure
>>> out what is causing this, I recommend leaving your Macs
>>> unmolested if you want to use the Phenix GUI.
>>>
>>> Updates to follow if-and-when I fix this.
>>>
>>> thanks,
>>> Nat
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
>>> http://phenix-online.org/mailman/listinfo/phenixbb
>>
>> ......................
>> Jürgen Bosch
>> Johns Hopkins University
>> Bloomberg School of Public Health
>> Department of Biochemistry & Molecular Biology
>> Johns Hopkins Malaria Research Institute
>> 615 North Wolfe Street, W8708
>> Baltimore, MD 21205
>> Office: +1-410-614-4742 <tel:%2B1-410-614-4742>
>> Lab: +1-410-614-4894 <tel:%2B1-410-614-4894>
>> Fax: +1-410-955-2926 <tel:%2B1-410-955-2926>
>> http://lupo.jhsph.edu <http://lupo.jhsph.edu/>
>>
>>
>>
>>
>>
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>
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