[phenixbb] Find Difference peaks and holes

[Nathaniel Echols]

Correct (if you tell it to write the PDB file).  "holes" = "negative peaks".

-Nat

On Fri, May 3, 2013 at 7:59 AM, Michel Fodje
<Michel.Fodje at lightsource.ca> wrote:
>
> Aren't those already listed as chain B in the output PDB file?
>
>>-----Original Message-----
>>From: phenixbb-bounces at phenix-online.org [mailto:phenixbb-
>>bounces at phenix-online.org] On Behalf Of Morten Grøftehauge
>>Sent: May-03-13 8:04 AM
>>To: PHENIX user mailing list
>>Subject: Re: [phenixbb] Find Difference peaks and holes
>>
>>Is there a way to make "Find Difference peaks and holes" utility list the
>>negative peaks as well? Just to give the user an idea of the noise levels of the
>>map and to identify any aberrations.
>>
>>/mo
>>
>>
>>On 3 April 2013 22:48, Nathaniel Echols <nechols at lbl.gov> wrote:
>>
>>
>>       On Wed, Apr 3, 2013 at 2:43 PM, John Rose
>><rose at bcl4.bmb.uga.edu> wrote:
>>       > I can't seem to find the "Find Difference peaks and holes" utility in
>>the PHENIX 1.8.2-1309 distribution.  I found it to be very useful.
>>       >
>>       > Can you tell me where it is hiding.
>>
>>
>>       It should be near the end of the list under the "Maps" category.
>>
>>       -Nat
>>
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>>
>>
>>
>>
>>--
>>Morten K Grøftehauge, PhD
>>Pohl Group
>>Durham University
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