[phenixbb] Unable to install phenix 1.8.1-1168 on Scientific Linux 6.3 64 bits
Davi de Miranda Fonseca
davi.fonseca at ntnu.no
Fri Jan 25 16:15:01 PST 2013
Dear all,
I am unable to install phenix 1.8.1-1168 on Scientific Linux 6.3 64
bits. Hence, I would greatly appreciate any 2 cents (or diamonds).
I installed Scientific Linux 6.3 64 bits, updated everything and
installed a couple of things that I think would be necessary. Then I
uncompressed phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3.tar
to /tmp and tried to install, however I got some errors. Hence, I
installed a couple more things and tried installing again.
This time it went through most of the installation but failed during the
configuration of phenix packages.
**** Here is my shell output:
[root at scientifix phenix-installer-1.8.1-1168]# ./install
==========================================================================
PHENIX Installation
version: 1.8.1
release tag: 1168
machine type: intel-linux-2.6-x86_64
source machine type: intel-linux-2.6-x86_64
OS version: linux
user shell: /bin/bash
destination: /usr/local
=========================================================================
==========================================================================
Installing from binary bundle
==========================================================================
bundle file:
bundle-1.8.1-1168-intel-linux-2.6-x86_64.tar.gz
PHENIX installation source directory set to:
/tmp/phenix-installer-1.8.1-1168
PHENIX installation target directory <PHENIX_LOC > set to:
/usr/local/phenix-1.8.1-1168
PHENIX installation build directory set to:
<PHENIX_LOC > /build/intel-linux-2.6-x86_64
PHENIX temporary build directory set to:
build-binary/intel-linux-2.6-x86_64/scientifix/tmp
PHENIX installation log directory set to:
build-binary/intel-linux-2.6-x86_64/scientifix/log
==== warning: "/usr/local/phenix-1.8.1-1168" already exists ====
==== warning: cannot determine installation time-stamp, proceeding ====
installing binary components
removing existing files in
build-binary/intel-linux-2.6-x86_64/scientifix/tmp/binary
finding installed versions
finding binary versions
binary components up-to-date
the binary package will not be installed
setting environment
configuring PHENIX components
Error configuring: see
/tmp/phenix-installer-1.8.1-1168/build-binary/intel-linux-2.6-x86_64/scientifix/log/binary.log
for details
***** And here are the last lines of
/tmp/phenix-installer-1.8.1-1168/build-binary/intel-linux-2.6-x86_64/scientifix/log/binary.log:
./build/intel-linux-2.6-x86_64/include/
./build/intel-linux-2.6-x86_64/include/phaser_defaults.params
./build/intel-linux-2.6-x86_64/include/phaser_nma_defaults.phil
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python:
/lib64/libc.so.6: version `GLIBC_2.14' not found (required by
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python)
By the way, Scientific linux 6.3 comes with glibc 2.12.
It might be too naive from me, but would it be possible to copy
libc.so.6 from glibc-2.14 somewhere and use an option during the
installation to point to it? Any better ideas? (Like a step-wise
description used in successful installation of phenix in Scientific
Linux 6.3 64)
Thank you for your time and help.
Cheers,
Davi
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