[phenixbb] Maximum Entropy Maps
pafonine at lbl.gov
Thu Feb 14 07:50:04 PST 2013
the plan was to describe it in January issue of CCN newsletter article
but I did not make it by the deadline.
The algorithm implemented in Phenix is fast: it should take from a few
seconds for small structures to a few minutes for large ones. I do not
understand why it should take long time to run (as pointed out in that
Acta D paper).
I would be interested to know your experience with this tool.
On 2/14/13 6:25 AM, Morten Groftehauge wrote:
> Hi guys,
> I see that phenix.maximum_entropy_map is now a command in Phenix.
> Some quick questions: Where is this likely to be must useful and does
> it take ridiculously long to run? From the Nishibori 2008 paper in
> Acta D it seems like this would mainly be useful for very high
> resolution structures that you would normally call complete - and that
> it would take a very long time to compute.
> I love trying out new methods but I need a bit more to go on with this
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