[phenixbb] phenix.find_ncs_from_density density_search.dump_ncs_density doesn't output mtz

[Francis Reyes]

Hi Tom


Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ? 

Thnx, 
$ phenix.find_ncs_from_density  find_ncs_from_density_params.eff ncs_mask_file=foo.mtz
Parameters taken from: find_ncs_from_density_params.eff
Sorry: 
Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz



F

On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:

> Hi Francis,
> 
> Try this:
> 
> phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz
> 
> and look for ncs_mask.mtz
> 
> (dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)
> 
> All the best,
> Tom T
> 
> 
> On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:
> 
>> I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?
>> 
>> Thanks,
>> F
>> 
>> 
>> 
>> ---------------------------------------------
>> Francis E. Reyes PhD
>> 215 UCB
>> University of Colorado at Boulder
>> 
>> 
>> 
>> 
>> 
>> 
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