[phenixbb] phenix.erraser error

[Russell Chan]

Hi,
I'm currently trying to use the new command, phenix.erraser, to refine my
RNA structure. I generated a ccp4 map and removed the R-free flags, however
it generates an error after its starts its first round of minimization.

The command I use is:

phenix.erraser <mypdb>.pdb <mymap>.ccp4

The error generated is:

###################################
Starting SWA_rebuild_erraser.py...
Output pdb will be...precursor_chi_erraser.pdb
Create temporary directory
/home/Russ/Desktop/erraser_test/precursor_chi_erraser_temp/...
fixed_res_final in Rosetta pdb file = []
cutpoint_final in Rosetta pdb file = [1, 2, 3, 4, 12, 15, 19, 20, 21, 25,
30, 37, 38, 49, 54, 58, 68, 69, 72, 79, 83, 84, 105, 108, 109, 122, 124,
125, 130, 133, 134, 137, 140, 143, 146, 158, 160, 161, 168, 170, 176, 179,
187, 189, 201, 204, 205, 216, 217, 228, 237, 239, 241, 245, 246, 268, 269,
273, 279, 283, 292, 293, 302, 305, 309, 311]
extra_res_final in Rosetta pdb file = []
Starting whole-structure minimization 1...

******************* ERROR ENDING ***************
Command 'phenix.python
/home/sbgrid/programs/x86_64-linux/phenix/1.8.1-1168/phenix-1.8.1-1168/phenix/phenix/erraser/full_struct_slice_and_minimize.py
-binary_name linuxgccrelease -map
/home/<Russ>/Desktop/erraser_test/erraser_map.ccp4 -map_reso 2.0
-new_torsional_potential True -pdb minimize_0.pdb -out_pdb minimize_1.pdb >
minimize_1.out 2> minimize_1.err' returned non-zero exit status 1

******************* ERROR ENDING ***************

Any help would be greatly appreciated!

Thanks,
Russell
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