[phenixbb] Phaser

Nathaniel Echols nechols at lbl.gov
Mon Nov 19 14:52:51 PST 2012

On Mon, Nov 19, 2012 at 10:14 AM, Morten Groftehauge
<mortengroftehauge.work at gmail.com> wrote:
>> By "parallel phaser", do you mean Phaser compiled with OpenMP, or do you
>> mean the GUI that allows you to run multiple searches in parallel?  They're
>> very different things...
> GUI alpha-thing.

Okay, this is different than what Randy or Phil were talking about.  I
suspect the resolution limits are being handled differently - in the
parallel Phaser wrapper, it sets the high resolution for both the MR
search and the refinement step to be the same, unlike the standard
Phaser-MR GUI where these are clearly separate.  I'm not sure if this
is optimal behavior - I wrote it this way mostly for speed reasons.
At any rate, this program was essentially an experiment that never
went anywhere and has effectively been superseded by the newer MR
pipeline (phaser.MRage); it might be time to retire it.


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