[phenixbb] den_refine on cluster

Jeff Headd jjheadd at lbl.gov
Tue Nov 13 19:24:40 PST 2012

Hi Michael,

Currently the only way to run the DEN implementation in Phenix on a SGE
cluster would be to submit a set of individual jobs with different
weight/gamma pairs. Adding more direct SGE support is on our list of things
to add, and hopefully that will happen soon.


On Tue, Nov 13, 2012 at 6:56 PM, Michael Thompson <miket at chem.ucla.edu>wrote:

> Hi All,
> Apologies if this is a naive question, but I would like to run DEN
> refinement and I notice the documentation says that it runs optimally on a
> machine with at least 30 processor cores. Is there any way to run DEN
> refinement on a SGE cluster as a batch job using something like
> run_command="qsub" as can be done with autobuild, etc.?
> Thanks,
> Mike
> --
> Michael C. Thompson
> Graduate Student
> Biochemistry & Molecular Biology Division
> Department of Chemistry & Biochemistry
> University of California, Los Angeles
> miket at chem.ucla.edu
> _______________________________________________
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> phenixbb at phenix-online.org
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