[phenixbb] Sugar refine in phenix

Jan van Agthoven janccp4 at gmail.com
Fri Nov 2 13:53:49 PDT 2012

Hi everyone,
This is a basic question. I would like to refine the sugar ends of my
protein. The sugar polymers are made of NAG and BMA and whenever I use
phenix.ready_set and subsequently phenix.refine it results in a
structure of disconnnected sugar monomers. Indeed the cif file
generated by
phenix.ready_set does'nt give any geometry constraints for connecting
the monomers. How do create a cif file that tells phenix.refine how to
refine the sugars?

More information about the phenixbb mailing list