[phenixbb] annealing omit map
ramme29 at yahoo.com
Wed May 16 13:26:21 PDT 2012
I found that COOT is interchanging the traditional colors (green +ve and red -neg) to (green -ve and red +ve), but if read the map using PHENIX GUI, COOT behaves. May be I did some default option wrong in COOT. But even If open the fofc map , COOT interchanges the red for positive
Sorry for the inconvenience.
From: r n <ramme29 at yahoo.com>
To: "phenixbb at phenix-online.org" <phenixbb at phenix-online.org>
Sent: Wednesday, May 16, 2012 11:16 AM
Subject: [phenixbb] annealing omit map
I have omitted some region manually from the pdb and did annealing - cartesian using phenix.refinment, the resulting map has density (1.2 sigma) in 2fofc and also
seen 2.8 sigma negative density on the omitted region?
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