[phenixbb] error generating output file overal_best pdb

[Andres PALENCIA]

Dear Phenix users,

I have been running Phenix_Autobuild successfully for the last houra. 
The program generates the corresponding Autobuild_run_** folders as 
usually, however I got an error message when the program was trying to 
generate the overal_best.pdb file after the Autobuild cycle 3.

I copy below the error message that I got, thank you in advance for any 
help:


OSError : [Errno 2] No such file or directory: '/user/palencia'

Traceback (most recent call last):
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/phenix/wxGUI2/Home/Jobs.py", 
line 170, in OnTimer
     self.project.refresh_detached_jobs()
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/phenix/wxGUI2/Tracking.py", 
line 72, in refresh_detached_jobs
     tmp_dir = self.get_tmp_dir()
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/phenix/phenix/tracking/project.py", 
line 97, in get_tmp_dir
     os.makedirs(tmp_dir)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 150, in makedirs
     makedirs(head, mode)
   File 
"/softdist/exp/pxsoft/phenix/v1.7.3-928/redhate4-x86_64/phenix-1.7.3-928/build/intel-linux-2.6-x86_64/base/lib/python2.7/os.py", 
line 157, in makedirs
     mkdir(name, mode)
OSError: [Errno 2] No such file or directory: '/user/palencia'



Platform info:
__FILE__ = 
/net/anaconda/scratch1/phenix/phenix-1.7.3-928/cctbx_project/boost_adaptbx/meta_ext.cpp
__DATE__ = Dec  6 2011
__TIME__ = 04:18:10
__x86_64__
__linux
__GNUC__ = 3
__GNUC_MINOR__ = 4
__GNUC_PATCHLEVEL__ = 2
boost::python::cxxabi_cxa_demangle_is_broken(): false
__GXX_WEAK__ = 1
__LP64__ = 1
__VERSION__ = 3.4.2 20041017 (Red Hat 3.4.2-6.fc3)
FE_INEXACT = 32
FE_DIVBYZERO = 4
FE_UNDERFLOW = 16
FE_OVERFLOW = 8
FE_INVALID = 1
FE_ALL_EXCEPT = 61
__SSE2__ = 1
BOOST_LIB_VERSION = 1_48
PY_VERSION = 2.7.2
PYTHON_API_VERSION = 1013
sizeof(bool) = 1
sizeof(short) = 2
sizeof(int) = 4
sizeof(long) = 8
sizeof(std::size_t) = 8
sizeof(void*) = 8
sizeof(long long) = 8
sizeof(float) = 4
sizeof(double) = 8
sizeof(long double) = 16
sizeof(boost::int32_t) = 4
sizeof(boost::uint32_t) = 4
sizeof(wchar_t) = 4
__PTRDIFF_TYPE__
Py_USING_UNICODE
sizeof(PY_UNICODE_TYPE) = 2
gnu libc version: 2.5
BOOST_ADAPTBX_TYPE_ID_SIZE_T_EQ_UNSIGNED_LONG
os.name: posix
sys.platform: linux2
sys.byteorder: little
platform.platform(): 
Linux-2.6.18-238.9.1.el5-x86_64-with-redhat-5.7-Final
platform.architecture(): ('64bit', 'ELF')
floating_point_exceptions.division_by_zero_trapped: False
floating_point_exceptions.invalid_trapped: False
floating_point_exceptions.overflow_trapped: False
number of processors: 24
Memory total:  25,263,722,496
Memory free:   20,157,317,120
import thread: OK
"hello" = ['h', 'e', 'l', 'l', 'o']
u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00', 'o', 
'\x00']
u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85']
LATIN CAPITAL LETTER A WITH RING ABOVE = Ã