[phenixbb] How to run normal mode analysis under command mode?

Nathaniel Echols nechols at lbl.gov
Sun Jun 10 16:59:13 PDT 2012


On Sun, Jun 10, 2012 at 4:21 PM,  <fn1 at rice.edu> wrote:
> I'd like to perturb my model with normal mode analysis. Does phenix have a
> way to do this?

Technically yes, but the options are whatever Phaser offers in
command-line mode (i.e. using CCP4-style keywords) - see here:

http://www.phaser.cimr.cam.ac.uk/index.php/Keyword_Example_Scripts#Normal_Mode_Analysis

We could certainly make this easier to run in Phenix, there just
hasn't been much demand.

-Nat


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