[phenixbb] ask refinement question including an aligo as the ligand

[crystallogrphy]

Hi,

I want to refine my structure including a sugar oligomer as the ligand in
Phenix GUI.

I first put each subunit into the density and merge them together as the
oligomer in Coot. Then I merged the oligomer coordinates to the protein
file. Then I run phenix.elbow to get the cif file. Finally, I run
phenix.refine. However, the oligomer units were pushed away from each
other. I guess I need to modify the cif file to link the oligo units
together. Does anyone know how I can I do it?

thanks!
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