[phenixbb] a question related to PDB file for phenix refinemnt

Ralf Grosse-Kunstleve rwgrosse-kunstleve at lbl.gov
Fri Jan 13 06:57:04 PST 2012


The list of atoms should appear next to the line you sent. Could you send
that list to me (or simply the whole log file)?


On Fri, Jan 13, 2012 at 1:00 AM, Dialing Pretty <hdc123hdc123 at yahoo.com>wrote:

>    Dear All,
>
> I just did a Phenix refine, but it gave the following sorry message:
>
> Number of atoms with unknown nonbounded energy type symbol: 3.
>
> I remember when I process the peptide with Coot, several H atoms were
> separated from the atoms they were attached to. I do not know whether this
> is the reason why the Phenix gives symbol 3.
>
> I am looking forward to getting your reply.
>
> Cheers,
>
> Dialing
>
>
>
>
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