[phenixbb] parameters for averaged kick maps
Jose M de Pereda
pereda at usal.es
Tue Dec 4 01:12:46 PST 2012
Dear all,
I would like to compare averaged kick maps obtained using different
“kick sizes”. Is it possible to define the kick size and the number of
kicks in phenix.refine and/or phenix.maps?
In phenix.refine, the “ordered_solvent” section has keywords to control
the generation of kick maps:
kick_map {
kick_size = 0.5
number_of_kicks = 100
}
But, it seems to me that these can not be used during the generation of
maps or maps’ coefficients.
Related with this issue, does phenix.refine always use the same kick
size or does it adjust it ad hoc (e.g. based on ML error estimates)?
Thanks a lot,
Jose
--
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Jose M de Pereda, PhD
Instituto de Biologia Molecular y Celular del Cancer (IBMCC)
Spanish National Research Council - University of Salamanca
Campus Unamuno s/n
E-37007 Salamanca, Spain
Phone: +34-923-294817
Fax: +34-923-294795
http://xtal.cicancer.org/
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