[phenixbb] autosol error

Terwilliger, Thomas C terwilliger at lanl.gov
Tue Aug 21 15:33:29 PDT 2012


Hi Nora,
I'm sorry for the trouble!  I haven't seen this error before...would it be possible to send me your input files off-list (terwilliger at lanl.gov)  (truncated data files would be fine) and input parameters (if you're running from the gui, then use "edit and run" and send me the resulting parameters file).  Then I can track it down.
Thanks a lot!
-Tom T

________________________________
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Nora Cronin [Nora.Cronin at icr.ac.uk]
Sent: Tuesday, August 21, 2012 3:18 PM
To: PHENIX user mailing list
Subject: [phenixbb] autosol error

Running phenix.autosol in input wavelength and f" and f' parameters are rejected as follows:

"Guessing wavelength for  mad is 1.0
Guessing scattering factors for  PT  at  1.0  A

Removing wavelength_list from Facts as length does not match
wavelength_list: [1.0721, 1.0538]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Removing f_prime_list from Facts as length does not match
f_prime_list: [-17.31, -15.31]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Removing f_double_prime_list from Facts as length does not match
f_double_prime_list: [11.93, 10.5]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Why is this rejection of input happening?  what does "length does not match" indicate?


Best

Nora



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