[phenixbb] Inputting DNA for Phenix MR and/or Autobuild

[Randy Read]

Hi,

For Phaser, the second option (each strand on a different line) will be fine for specifying the composition.  Since all Phaser is worried about is the composition, it wouldn't really matter if you put it all on one line.

For AutoBuild, we'll have to wait for Tom T to answer, because I don't know how you say that two things are different strands.

Regards,

Randy

-----
Randy J. Read
Department of Haematology, University of Cambridge
Cambridge Institute for Medical Research    Tel: +44 1223 336500
Wellcome Trust/MRC Building                         Fax: +44 1223 336827
Hills Road                                                            E-mail: rjr27 at cam.ac.uk
Cambridge CB2 0XY, U.K.                               www-structmed.cimr.cam.ac.uk

On 25 Apr 2012, at 19:48, Charles Allerston wrote:

> Dear all,
>  
> I can’t find much in the way of documentation for this.  Can someone point me to some please?
> 
> I basically want to know the correct format for entering DNA into the search for MR and inputting into Autobuild.
>  
> If I have a double stranded DNA do I enter it as
>  
> >DNA1
> AATT:AATT
>  
> >DNA1
> AATT
> TTAA
>  
> etc.
>  
> ?
>  
> cheers,
>  
> charlie
>  
>  
> Dr. Charles Allerston
> Genome Integrity & Repair
> Structural Genomics Consortium
> Nuffield Department of Medicine
> Old Road Campus
> University of Oxford
> OX3 7DQ
> http://www.thesgc.org/scientists/groups/oxford/genome-integrity-and-repair
>  
>  
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