[phenixbb] phenix.phaser generate .sol file

G Y gysubscribe at gmail.com
Mon Oct 24 06:15:57 PDT 2011

Thank you for your kind answer. In fact, what I need are the euler angles,
translation vectors and Z-scores for each solution. I run phenix.phaser from
a shell script by phenix.phaser params.eff, not from GUI, still I can not
file a .sol file.

How can I get those information if there is no .sol file? I found in output
log file there are some information like that. But they are not summarized
in a nice list and located at different part of the log file which makes it
difficult to grep these informations. Is there any easy way to obtain a list
for euler angles, translation vectors, Z-socre for all the solutions in a
nice format?

Thank you again.

On Fri, Oct 14, 2011s at 1:01 AM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Thu, Oct 13, 2011 at 2:43 AM, G Y <gysubscribe at gmail.com> wrote:
> > I run phaser in phenix with GUI and script using params.eff. For both
> > case, I can not find .sol file in the outputs. What option or command I
> > should used in GUI and params.eff to generate the .sol file in the
> outputs?
> > Thanks for your kind help!
> There isn't a way to do this right now - Phaser saves the result as a
> Python "pickle" file, which encapsulates (among other things) the
> information contained in the .sol file.  When this saved result is
> loaded back into Phaser the solution information is read directly,
> without an intermediate file.  Does I need to add an option to write
> out the .sol too?  I had assumed there wasn't any information in it
> that was interpretable by humans.
> -Nat
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