[phenixbb] phenix.pdbtools

Abhinav Kumar abhinavk at slac.stanford.edu
Fri Oct 21 10:15:05 PDT 2011


Thanks.
The options keep changing with version updates.
The command line "phenix.pdbtools --help" does NOT list all options.

After some digging I found that the equivalent option is
model_statistics=true without the preceding '--'.

Thanks,
Abhinav

JCSG at SSRL, SLAC
Phone: (650) 926-2992
Fax: (650) 926-3292


On 10/21/2011 10:07 AM, Ed Pozharski wrote:
> Normally you should be able to get the list of options by just running
> the command without parameters.  It may, of course, be incomplete: the
> version that I have lists both --show-adp-statistics and
> --show-geometry-statistics as "Show complete ADP (B-factors)
> statistics.", which is unlikely.
>
> On Fri, 2011-10-21 at 09:45 -0700, Abhinav Kumar wrote:
>> Hi,
>>
>> I had been using the pdbtools to obtain the rmsd on various geometry
>> parameters using the command:
>> phenix.pdbtools my.pdb --show-geometry-statistics
>>
>> Now pdbtools does not recognize the option
>> "--show-geometry-statistics"
>>
>> What is the option now?
>>
>> I am using phenix-1.7.2-869.
>> -- 
>>
>> Thanks,
>> Abhinav
>>
>> JCSG at SSRL, SLAC
>> Phone: (650) 926-2992
>> Fax: (650) 926-3292
>>
>>
>>
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
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