[phenixbb] measuring angle

Pavel Afonine pafonine at lbl.gov
Tue Nov 22 08:01:34 PST 2011


Hi Hena,

> In PDBSET, I can use CHAIN command in shell script to write a pdb file 
> with a desired chain ID. What is the command
>  in shell script to write a pdb file with a desired SEGID?

phenix.pdbtools is the tool to do such manipulations:

http://www.phenix-online.org/documentation/pdbtools.htm

Examples:

- remove chain A:

phenix.pdbtools model.pdb remove="chain A"
or equivalently:
phenix.pdbtools model.pdb keep="not chain A"

- remove SEGID:

phenix.pdbtools model.pdb remove="segid A"

Pavel



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