[phenixbb] ligand problem in phenix.refine

[Pavel Afonine]

  Hi,
> Actually I have generated the sugar cif using phenix.elbow (phenix is
> pretty handy at this:-), but not sure how to generate the link
> information...

as I mentioned in previous email, please use custom bonds for this that 
allows you to define a covalent bond between any two selected atoms. You 
can define as many of such bonds as you wish. You can define angles too.

Please note, phenix.refine does not use or outputs LINK records at all.

Pavel.