[phenixbb] Glycan Links/Restraints

[Damian Ekiert]

Nigel and Engin,

The script shows the NAG-ANS linkage being enforced, thanks.  

Engin, thanks for pointing out the inversion of my BETA1-4 links, that fixed the problem.  As Phenix struggled to enforce my backwards restraints, it was distorting everything.  Now my glycans look great!

Best,

Damian





On Mar 1, 2011, at 2:58 PM, Nigel Moriarty wrote:

> Engin
> 
> I would like to see the restraints for MAN and BMA that are correct
> compared to the monomer lib. I'd be interested in making it available
> in PHENIX.
> 
> Damian
> 
> You can check if the ASN and NAG are connected using the alpha script
> 
> elbow.refine_geo_display model_refine.geo NAG ASN
> 
> Nigel
> 
> -- 
> Nigel W. Moriarty
> Building 64R0246B, Physical Biosciences Division
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
> Fax   : 510-486-5909       Web  : CCI.LBL.gov
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