[phenixbb] Glycan Links/Restraints
dcekiert at scripps.edu
Tue Mar 1 18:00:42 PST 2011
Nigel and Engin,
The script shows the NAG-ANS linkage being enforced, thanks.
Engin, thanks for pointing out the inversion of my BETA1-4 links, that fixed the problem. As Phenix struggled to enforce my backwards restraints, it was distorting everything. Now my glycans look great!
On Mar 1, 2011, at 2:58 PM, Nigel Moriarty wrote:
> I would like to see the restraints for MAN and BMA that are correct
> compared to the monomer lib. I'd be interested in making it available
> in PHENIX.
> You can check if the ASN and NAG are connected using the alpha script
> elbow.refine_geo_display model_refine.geo NAG ASN
> Nigel W. Moriarty
> Building 64R0246B, Physical Biosciences Division
> Lawrence Berkeley National Laboratory
> Berkeley, CA 94720-8235
> Phone : 510-486-5709 Email : NWMoriarty at LBL.gov
> Fax : 510-486-5909 Web : CCI.LBL.gov
> phenixbb mailing list
> phenixbb at phenix-online.org
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