[phenixbb] Elbow and smiles to make CO coordinates

Yarrow Madrona amadrona at uci.edu
Fri Jul 8 10:41:13 PDT 2011


Hi,

I am trying to use Elbow and smiles to generate carbon monoxide
coordinates. I thought it would be easy enough. I made two waters in coot
and changed the the oxygens to C and O and set the distance around 1.13
angstrom.  Saved these coordinates as a PDB. I then used this in Elbow but
it gives me a methyl group.  Not sure what is going on. Any help would be
appreciated. Thank you!

-Yarrow

-- 
Yarrow Madrona

Graduate Student
Molecular Biology and Biochemistry Dept.
University of California, Irvine
Natural Sciences I, Rm 2403
Irvine, CA 92697





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