[phenixbb] phenix.mr_rosetta paths

Tom Terwilliger terwilliger at lanl.gov
Mon Jan 31 12:35:35 PST 2011

Hi again Ben,

I forgot to mention that there are also several worked-out examples for phenix.mr_rosetta:

1. If you go to:  $PHENIX/phenix_examples/HNP3-mr-rosetta there is a demo example for a small structure.

2. If you go to:  http://www.phenix-online.org/phenix_data/terwilliger/rosetta_2011/ you will find several real examples with scripts in the blind_tests/ directory.

All the best,
Tom T

On Jan 31, 2011, at 1:15 PM, Ben Eisenbraun wrote:

> Hi,
> I'm testing Rosetta 3.2+PHENIX 1.7-650, and in the phenix.mr_rosetta
> output, I see:
> Checking rosetta paths:
>  rosetta binary: /programs/l/rosetta/3.2/rosetta_source/bin/mr_protocols.default 
>  database_dir: /programs/l/rosetta/3.2/rosetta_database 
>  script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/public/electron_density
> pilot_script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/pilot/frank/
> In the script directory, the C++ files were not built along with the
> regular Rosetta build.  Do those need to be compiled for the target
> platform?
> Also, the pilot_script_dir is empty.  Is there supposed to be something in
> there?
> Thanks.
> -ben
> --
> | Ben Eisenbraun
> | SBGrid Consortium                          | http://sbgrid.org       |
> | Harvard Medical School                     | http://hms.harvard.edu  |
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss

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