[phenixbb] Problem with loop fitting
knettles at scripps.edu
Mon Jan 24 12:47:02 PST 2011
Dear PHENIX developers,
I am trying fit_loops for the first time and getting error message:
"No suitable gap found matching residues"
I'm not sure what the problem is.
knettles$ phenix.fit_loops pdb_in=Liganded_overall_best-coot-1.pdb mtz_in=cycle_best_refine_map_coeffs_1.mtz seq_file=seq.dat start=331 end=336 chain_id=A
# Fit loops in a PDB file with gaps
# Type phenix.doc for help
Input sequence file is seq.dat
Reading sequence from seq.dat
Fit_loops: Fit a missing loop in a model.
Map from: TEMP_cycle_best_refine_map_coeffs_1.mtz using labin FP=2FOFCWT PHIB=PH2FOFCWT
Model from: Liganded_overall_best-coot-1.pdb
LABIN LINE: FP=2FOFCWT PHIB=PH2FOFCWT
No suitable gap found matching residues 331 - 336 chain: A
No final model obtained
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