[phenixbb] Writing PDB

[Pavel Afonine]

Alternatively, you can do it like this:

phenix.pdb_atom_selection model.pdb "chain A" --write-pdb-file=chain_A.pdb

or

phenix.pdbtools remove=" not chain A" model.pdb

Pavel

On 12/3/11 2:47 PM, Jeff Headd wrote:
> Hi Bradley,
>
> You can use phenix.pdbtools to select a specified chain. The syntax is
> like this:
>
> phenix.pdbtools keep="chain A" model.pdb
>
> This will write out a new PDB file which only contains chain A.
>
> Jeff
>
> On Sat, Dec 3, 2011 at 2:11 PM, Bradley Hintze<bradley.hintze at duke.edu>  wrote:
>> Hi again,
>>
>> I am trying to  take a pdb and write out a new pdb with just a specified
>> chain. I am trying to do this with the hierarchy but am unfamiliar with its
>> functions How do I do this?
>>
>> Thanks,
>> Bradley
>>
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