[phenixbb] phenix.mr_rosetta
Andreas Förster
docandreas at gmail.com
Tue Aug 2 09:36:13 PDT 2011
Dear all,
I've made the frightening plunge into the cold waters of Rosetta (3.3
this time) again, with an eye on using it with Phenix, and am sharing
the joy.
Things work, but:
- Download rosetta_source and rosetta_database separately. The bundle
doesn't contain all the files.
- Compilation fails on RHEL 6.1 (gcc 4.5 issue) but sails on RHEL 5.5.
- $PHENIX_ROSETTA_PATH must point to the Rosetta installation directory
(where rosetta_source and rosetta_database sit). Don't be misled by the
phenix.mr_rosetta documentation into setting $PHENIX_ROSETTTA_PATH
(triple T).
- all directories in the Rosetta installation must be made accessible to
users
find $PHENIX_ROSETTA_PATH -type d -exec chmod 755 '{}' \;
Hope that helps someone.
Andreas
--
Andreas Förster, Research Associate
Paul Freemont & Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
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