bradley.hintze at duke.edu
Wed Apr 27 10:43:49 PDT 2011
This shows my ignorance about mtz files. I'm having trouble with
phenix.find_helices_strands. I got 3kat.mtz from Pavel's database.
$ phenix.find_helices_strands 3kat.mtz labin="LABIN FP=2FOFCWT
Wed Apr 27 13:12:19 2011
Commands: phenix.find_helices_strands 3kat.mtz labin=LABIN FP=2FOFCWT
# Find secondary structure in a map defined by map coeffs in an input mtz
# Type phenix.doc for help
Input map resolution is 3.1 A
Labin line will be: LABIN FP=2FOFCWT PHIB=PH2FOFCWT
To change it modify this by specifying FP= and PHIB= [and optionally FOM=]
labin="LABIN FP=2FOFCWT PHIB=PH2FOFCWT"
Map from: TEMP_3kat.mtz using labin LABIN FP=2FOFCWT PHIB=PH2FOFCWT
NOTE: ratio_trace_extra increased to 1.3 A as dmin > 3.0
NOTE: rad_sep_trace increased to 0.6 A as dmin > 3.0
Fixing sampling interval rad_sep_trace= 0.6 A
Optimizing CA-CA tolerance to obtain ratio of 4.0 for nonamers:atoms
Tracing chains at resolution of 3.1 A
CCP4: Error in label assignments in LABIN
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the phenixbb