[phenixbb] Residue number error after autoMR or PhaserMR
nechols at lbl.gov
Wed Apr 20 11:06:27 PDT 2011
On Wed, Apr 20, 2011 at 9:33 AM, Zhang yu <phenixzyfish at gmail.com> wrote:
> When I run MR in Phenix, I found that there is a numbering error in the
> solution PDB file
> The error is that Phenix numbers residues from 0 again when the residue
> numbers are over 999, though they belong to the same chain.
> For example
> ATOM 11513 NE2 HIS C 999 -35.122 54.953 55.285 1.00 69.80 N
> ATOM 11514 N MET C 0 -36.544 51.378 60.309 1.00 64.17 N
> ATOM 11522 N VAL C 1 -37.840 53.015 63.272 1.00 69.46 N
> Does anyone has idea about it?
Phaser has its own PDB parser, and it looks like it only reads
characters 2-4 in the residue number. This sounds like a bug, but
there may be some reason for it - we'll check this out.
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