[phenixbb] O-linked glycosylation refinement in Phenix
chen at red.dfci.harvard.edu
Mon Apr 11 14:15:43 PDT 2011
I'm refining a structure which has both N-linked and O-linked
glycosylation. I use Phenix to do the refinement. It works well for the
N-linked NAG. I defined the link as the following:
data_link = "NAG-ASN"
residue_selection_1 = "chain A and resname NAG and resid 701"
residue_selection_2 = "chain A and resname ASN and resid 518"
But it doesn't work when I defined the fucose-threonine link as the
data_link = "FUC-THR"
residue_selection_1 = "chain A and resname FUC and resid 801"
residue_selection_2 = "chain A and resname THR and resid 596"
The error message is "missing CIF link: data_link_FUC-THR".
Does anyone have the cif link file of FUC-THR?
Thanks a lot!
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