[phenixbb] "FOM" or HL coeffs from model?
pafonine at lbl.gov
Fri Apr 1 16:20:20 PDT 2011
now you should be able to do it using phenix.reciprocal_space_arrays
command line tool once the next PHENIX nightly build gets available.
On 3/21/11 2:23 PM, Phoebe Rice wrote:
> How can I get phenix to spit out not just PhiModel but an estimated FOM or fake HL coefficients (without experimental phases - just based on how badly my model agrees with FOBS)? And I'd like the weights in their own personal mtz column(s), not just precombined in a "weighted phi" column.
> In case anybody cares why, I'd like to use solvent massaging and domain-wise averaging to remove bias from a low-resolution model-phased map, preferably with DM, unless anybody has a better suggestion. I did rigid body, TLS, etc on the model in phenix, so it seems like phenix has already calculated all the info I want if I could only squeeze it out.
> thanks, Phoebe
> Phoebe A. Rice
> Dept. of Biochemistry& Molecular Biology
> The University of Chicago
> phone 773 834 1723
> phenixbb mailing list
> phenixbb at phenix-online.org
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