[phenixbb] same origin

[r n]

Tom, 
Thanks a lot




________________________________
From: Tom Terwilliger <terwilliger at lanl.gov>
To: PHENIX user mailing list <phenixbb at phenix-online.org>
Sent: Wed, November 24, 2010 3:14:06 PM
Subject: Re: [phenixbb] same origin

Hi Ram,

You can use 

   phenix.get_cc_mtz_pdb  map_coeffs1.mtz model_2.pdb

which will create 

    offset.pdb

which is a copy of model_2.pdb, adjusted for the origin of map_coeffs_1.mtz, and 
therefore superimposing on model_1.pdb with space-group symmetry plus allowed 
origin shifts.

This will not change the hand, however.

I hope that does what you need!
-Tom T



On Nov 24, 2010, at 1:53 PM, r n wrote:

<--static--liam_fetch_lb.gif>  
>Hi all
>
>
>
>
>I wanted to compare the two models from two data set. I want the MR replacement 
>in same 
>origin to compare their them with respect to the map and model.
>
>
>I tried reforigin in ccp4 , it gave me some error , that I am not aware or not 
>clear.
>
>
>I did tried overlay the two model and rfree is going up. Most likely different 
>hands, 
>so Is there any way to compare the two model and data and modify them in Phenix
>either reindex or shift the model origin to same in all cases.
>
>
>Thought phenix.xmanip could help, not seen any option to do it command line or 
>in the GUI.
>
>
>I did tried def file, but phenix.xmanip params.def , it complains me that 
>unknown file or keyword?
>
>
>any help will be appreciated.
>
>
>Thanks
>ram
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>     
><--static--liam_fetch_bl.gif>   
>_______________________________________________
>phenixbb mailing list
>phenixbb at phenix-online.org
>http://phenix-online.org/mailman/listinfo/phenixbb
>


Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation 
web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss


      
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20101124/a7c3d7eb/attachment-0003.htm>