[phenixbb] sculptor : "Wrong alignment format:"
Dr G. Bunkoczi
gb360 at cam.ac.uk
Fri Nov 19 14:57:07 PST 2010
Sculptor is Python only, so OpenMP will not help. But in principle, we
could make it parallel. Generally, sculptor only takes a couple of seconds
to run, and there was not much point in making it use multiple CPUs.
However, in certain cases it takes much longer for no apparent reason.
There is actually a new version out there (I have checked it in yesterday)
that should be faster. Is this what you are running (0.3.0)?
On Nov 19 2010, Bryan Lepore wrote:
>On Fri, Nov 19, 2010 at 4:59 PM, Dr G. Bunkoczi <gb360 at cam.ac.uk> wrote:
>> change the extension to .ali
>
>...like magic.
>
>(its still running though) ... if i recompile with --openmp will
>sculptor use >1 processor?
>
>-Bryan
>_______________________________________________
>phenixbb mailing list
>phenixbb at phenix-online.org
>http://phenix-online.org/mailman/listinfo/phenixbb
>
--
##################################################
Dr Gabor Bunkoczi
Cambridge Institute for Medical Research
Wellcome Trust/MRC Building
Addenbrooke's Hospital
Hills Road
Cambridge CB2 0XY
##################################################
More information about the phenixbb
mailing list