[phenixbb] NCS problems using phenix GUI on a Mac
Mark A Saper
saper at umich.edu
Wed May 5 08:40:43 PDT 2010
I am having the exact same problem. I need the NCS parameters in a format suitable for AutoBuild which I think is different than phenix.refine. Are you trying to use phenix.simple_ncs_from_pdb routine in GUI? Let me know if you have made any progress.
> I am having difficulties defining NCS parameters using the GUI
> interface (Mac 10.4.11; phenix 1.6-289).
> Phenix will automatically select NCS restraint groups and use them
> during refinement. But if I edit the automated selections to my
> liking then click on Update and Save, the refinement runs with the
> original parameters unedited. I have tried reading in a ncs.param
> file, but it does not get read during the refinement run. Also, an
> intermittent problem with this GUI is that I am not allowed to "Add"
> a new restraint group. When I click this button, it just clears out
> the selections on the last group, and does not add a new group. Any
> John Pascal, PhD ph 215.503.4596
> Assistant Professor fx 215.923.2117
> Thomas Jefferson University
> Biochemistry & Molecular Biology
> 233 South 10th Street, BLSB 804
> Philadelphia, Pennsylvania 19107
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
University of Michigan
Biophysics, 3040 Chemistry Building
930 N University Ave
Ann Arbor MI 48109-1055 U.S.A.
saper at umich.edu phone (734) 764-3353 fax (734) 764-3323
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