[phenixbb] h_bonds restraints

Pavel Afonine PAfonine at lbl.gov
Sat Mar 27 17:01:12 PDT 2010


Hi Maia,

not sure if it makes sense to me, but anyway, technically you can do 
that: just define a custom bond between these two atoms as described in:

http://www.phenix-online.org/version_docs/1.6.1-353/refinement.htm#anch80

And to make sure phenix.refine doesn't remove any of these two waters, 
run it with "ordered_solvent=true".

Pavel.


On 3/27/10 4:55 PM, Maia Cherney wrote:
> Pavel,
> I just want to restrain the distance between 2 particular waters. Is 
> it in the pdb_interpretation?
> Maia
>



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