[phenixbb] phenix gui freezes
harijay at gmail.com
Thu Mar 11 12:59:10 PST 2010
I am assuming that commenting the
Will sever the connection with coot right. So is the option then for a
phenix.validate talking to coot session for molprobity assisted rebuilding
to have phenix write out the external gui ..and then just close or kill the
On Thu, Mar 11, 2010 at 9:48 AM, Nathaniel Echols <NEchols at lbl.gov> wrote:
> I have one other thought - the GUI listens on a socket for incoming
> commands from Coot (this isn't used very much at present). Apparently this
> caused problems on Linux with the old GUI, which also used Python sockets.
> If something goes wrong here, it could certainly take down the entire
> To fix this, edit the file $PHENIX/phenix/wxGUI2/App.py, and comment out
> this line (in 1.6):
> (if you're new to python, a comment starts with '#'.)
> I will add a preferences setting to do this. I can also try slowing down
> the GUI updates while a process is running (using detached processes should
> also take care of this).
> On Mar 11, 2010, at 7:28 AM, John Berrisford wrote:
> > Dear All
> > A little while ago I posted a message about the GUI freezing on linux
> systems, either run remotely (centos) or locally (ubuntu system). I never
> received a solution and I'm still having this problem despite upgrading to
> version 1.6.
> > On my ubuntu system the GUI seems to freeze either when the screen saver
> comes on (set to turn the screen off) or I switch desktop - although not
> everytime I do this.
> > The freezing GUI means that I have to force quit phenix after every
> refinement run (I haven't tried other tasks) and that the freeR is not
> reported to the GUI (not a major problem). Thankfully in version 1.6 the
> configuration and results for each refinement run are recorded and I can
> retrieve this information by loading a job through job history - a big
> improvement over version 1.5.
> > Anyone else having this problem and does anyone know a solution?
> > Thanks
> > John
> > --
> > John Berrisford
> > Medical Research Council
> > Mitochondrial Biology Unit
> > Wellcome Trust / MRC Building
> > Hills Road
> > Cambridge
> > CB2 0XY
> > WEB: www.mrc-mbu.cam.ac.uk
> > TEL: +44 (01223) 252918
> > _______________________________________________
> > phenixbb mailing list
> > phenixbb at phenix-online.org
> > http://phenix-online.org/mailman/listinfo/phenixbb
> Nathaniel Echols
> Lawrence Berkeley Lab
> NEchols at lbl.gov
> phenixbb mailing list
> phenixbb at phenix-online.org
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