[phenixbb] autosol interface bug? selinux conflict?
Stuart Endo-Streeter
stuart.endostreeter at duke.edu
Tue Mar 9 15:03:43 PST 2010
Dear board...
I am trying to run autosol with a native dataset and a mad experiment to
extend the phases. Unfortunately I cannot even begin the actual process
(without some weird convolutions) because phenix keeps giving the following
message:
"You must select a column label to use in each reflection file. If no
labels are shown in the drop-down menu, it may not be a valid format."
Problem is, column labels are selected. "i_obs sigma" is showing in the
label field for each dataset. Clicking on the field to try to re-select
makes no difference, I still get the same error message. If I load just a
single anomalous dataset in addition to the native dataset, usually autosol
will run, sometimes not. It does not matter which anomalous dataset I am
using. If I load the native and only one of the anomalous datasets it
usually works. If I then repeat the process of adding a single anomalous
dataset, running autosol, aborting the run, then adding the next dataset,
eventually I can add all the datasets and start autosol.
After this repetitive route got autosol running, I ran into some kind of
selinux security warning that blocked autosol and caused it to crash. I
seem to have fixed that issue by switching temporarily to permissive mode,
but disabling security to run phenix hardly seems the appropriate solution.
I didn't manage to catch the autosol error message, I will try to recreate
it later tonight if needed.
My system is CentOS 5.4, gui is KDE, phenix is v1.6, installed just
yesterday.
Any suggestions/clues would be appreciated.
Stuart Endo-Streeter
________________________________
Stuart Endo-Streeter, Ph.D
Dept. Computer Science
Duke University Medical Center
3245 French Family Sciences Building
919-660-4018
stuart.endostreeter at duke.edu
More information about the phenixbb
mailing list