[phenixbb] python issues
Patrick Loll
pat.loll at drexel.edu
Tue Mar 9 14:01:13 PST 2010
Hi,
This is really a ccp4-provoked question, but it relates to phaser &
cctbx (I think), so I'll try here as well:
After an install of ccp4 on a MacBook Pro running Snow Leopard and on
a MacPro running Leopard, the command:
source /sw*/bin/init.csh (where /sw* is either /sw64 on the
machine running 10.6, or /sw on the machine running 10.5)
gives the error:
*******************************************
Fatal Error: Incomplete libtbx environment!
*******************************************
Please re-run the libtbx/configure.py command.
If I go to ...ccp4.../src/phaser/phaser-2.1.4/libtbx/ and type
python configure.py
Then it tells me that the md5 module is deprecated, and that the cool
kids use hashlib instead. Does this mean that I need to go to an
earlier version of python? Will that mess up other things?
Curiously, one machines giving this problem has python 2.5.1, while
the other has 2.6. However, I currently have python 2.5.1 running on
another machine (albeit with a slightly earlier version of ccp4) and
it doesn't give me this problem.
Ideas?
Thanks,
Pat
---------------------------------------------------------------------------------------
Patrick J. Loll, Ph. D.
Professor of Biochemistry & Molecular Biology
Director, Biochemistry Graduate Program
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA 19102-1192 USA
(215) 762-7706
pat.loll at drexelmed.edu
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