[phenixbb] coot integration require coot with python?
harijay at gmail.com
Wed Mar 3 16:28:06 PST 2010
I figured as much that the integration used python given the ph in
phenix..hopefully python returns to the ccp4 provided coot . Till then I
guess I will use the fink compiled coot or Bill Scotts binaries.
On Wed, Mar 3, 2010 at 7:13 PM, Nathaniel Echols <NEchols at lbl.gov> wrote:
> On Mar 3, 2010, at 2:36 PM, hari jayaram wrote:
> > Is it likely that the phenix-coot integration with the new GUI requires a
> python infused coot ?. Although I have set the coot path correctly nothing
> happens after coot launches .
> > I am using the ccp4 6.1.3 coot 0.6 (revision 2540) [with guile 1.8.3
> embedded] and phenix 1.6.289 on OSX snow leopard 10.6.2.
> > I know the ccp4 coot does not come with python scripting support ...the
> pymol integration seems fine , but coot just sits there with an empty window
> after a phenix.validate run.
> Sorry, without Python embedded there's nothing you can do. Don't bother
> with the Coot packages distributed by CCP4 - use the binaries on Bill
> Scott's web page, or install it with Fink. I think the GUI used to display
> a warning if the Coot build was incomplete, but I never got this to work
> properly. Unfortunately several other people have run into this same
> problem, so I'll see if I can restore the Python check.
> Nathaniel Echols
> Lawrence Berkeley Lab
> NEchols at lbl.gov
> phenixbb mailing list
> phenixbb at phenix-online.org
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