[phenixbb] LigandFit parameters?
hermifi at yahoo.com
Tue Jul 27 07:47:08 PDT 2010
I am using LigandFit on the GUI version of Phenix. In my electron density map
there is a good density for my ligand.
And I have my ligand in pdb format. As an input to LigandFit I gave my ligand
file(pdb), an MTZ file from my data processing
and my protein at some stage of refinement (@ a good R-values). I used the
default settings (Resolution=0, Minimum CC of ligand to map=0.75
and Ligand map shape=Fo-Fc) and I got a bad result. My overall CC=0.33 and
Score=68.68). What shall I do to get the best solution???
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