[phenixbb] Phenix auto-excluding some reflections

[Pavel Afonine]

Hi Sam,

where did you find "The "cut- off sigma(F)" value is 0.12" ?

If you send me the .log file created by phenix.refine I might be able to 
explain what you see.

Pavel.



On 7/8/10 6:32 AM, Sam Stampfer wrote:
> Hi,
>
> I'm in the process of depositing coordinates for a few structures and 
> I noticed that the "number of unique reflections (observed)" is 
> different in the "refinement statistics section" (108812) (read 
> automatically from the phenix-refined pdb file) versus the 
> "reflections" section (118749).  The "cut- off sigma(F)" value is 0.12 
> (read automatically from the phenix-refined file).  What criteria does 
> phenix use to reject these ~10,000 reflections?
>
> Thanks!
>
> -Sam
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