[phenixbb] Phenix auto-excluding some reflections

[Sam Stampfer]

Hi,

I'm in the process of depositing coordinates for a few structures and I
noticed that the "number of unique reflections (observed)" is different in
the "refinement statistics section" (108812) (read automatically from the
phenix-refined pdb file) versus the "reflections" section (118749).  The
"cut- off sigma(F)" value is 0.12 (read automatically from the
phenix-refined file).  What criteria does phenix use to reject these ~10,000
reflections?

Thanks!

-Sam
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