[phenixbb] Phenix.refine RuntimeError

Ralf W. Grosse-Kunstleve rwgk at cci.lbl.gov
Sat Jan 9 19:04:54 PST 2010

> I tried to refine a N-linked glycan using phenix.refine and used the
> data_link=NAG-ASN for ASN-NAG connection. But I got a RuntimeError of
> unknown atom_id: HD22. From the mon_lib_list.cif file of Phenix-1.5-2,
> the atom_id HD22 is already defined. Any suggestions are appreciated.

Could you send me residues
  chain A and resname ASN and resid 170
  chain A and resname NAG and resid 1
from your pdb file?


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