[phenixbb] geometry weight and rmsd bonds - angles

[Ralf W. Grosse-Kunstleve]

Hi Lionel,

> wxc_scale (from default 0.5 downto 0.015),  wxu_scale (from default 1 down
> to 0.03), wc (from default 1 up to 8), with and without optimising wxc wxu.
> Whatever the parameters, phenix never reached final rmsd better than 0.022
> and 2.2.

The first thing I'd check is the phenix.refine log with the list
of worst restraints. Look for "Sorted by residual". Without
having seen your structure, my first suspect would be problems
with the ligand restraints or the covalent link to the protein.

Ralf