[phenixbb] syntax for Averaged Kicked maps and maps.param
amadrona at uci.edu
amadrona at uci.edu
Mon Aug 2 17:38:05 PDT 2010
Hello,
Disclaimer: I am a newbie to both crystallagraphy and Phenix.
I am running phenix.refine (v1.6-289) in the command line
1. I want to make averaged "kicked-maps" but I keep getting a syntax
error. I tried renaming "maps.param" but this file was not recognized.
2. When I enter Phenix.maps into the command line I get a message that
syas "not implemented"
I am trying to get the latest versiou of phenix installed.
The following is the syntax I put in my custom_params file
Thanks
-Yarrow
refinement.main.number_of_macro_cycles = 2
#refinement.main.fix_rotamers = True
refinement.refine.strategy = individual_sites+individual_adp
refinement.output.prefix = CIN4_refine_omit
refinement.output.serial = 12
refinement.output.write_def_file = True
refinement.target_weights_wxc.scale = 0.2
refinement.main.max_number_of_interations=15
refinement.electron_density_maps {
map {
mtz_label_amplitudes = "2FOFCWT_kick"
mtz_label_phases = "PH2FOFCWT_kick"
likelihood_weighted = True
obs_factor = 2
calc_factor = 1
kicked = True
fill_missing_f_obs_with_weighted_f_model = True
}
map {
mtz_label_amplitudes = "FOFCWT_kicked"
mtz_label_phases = "PHFOFCWT_kicked"
likelihood_weighted = True
obs_factor = 1
calc_factor = 1
kicked = True
fill_missing_f_obs_with_weighted_f_model = false
}
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