[phenixbb] Phenix Ligand Identification error

Li-Wei Hung lwhung at lbl.gov
Sat Apr 24 10:51:54 PDT 2010


Hi Rajan,

If you are using the command-line, could you send me your full input 
command, and possibly the log file of this particular job?
Also, it would be better if you can send me your mtz file.
You can send those to me off-line if you like.

Thanks,

Li-Wei Hung



Rajan wrote:
> Dear All
>
> Greetings
>
> I was searching for a ligand present in the active site of my protein 
> using Ligand  Search in  "PHENIX"
>
> but i stuck in between with an error :
>
>
> A Python error was detected.  This may be a problem with the program 
> settings, an error in your data, or a bug; click "OK" to send a bug 
> report to the PHENIX developers.
>
>
> AttributeError : ligand_identification instance has no attribute 
> 'connections'
> Traceback:
>   File "/home/programs/linux/phenix-
> 1.6.1-357/cctbx_project/libtbx/thread_utils.py", line 137, in run
>     return_value = self._target(self._args, self._kwargs, self._c)
>
>   File 
> "/home/programs/linux/phenix-1.6.1-357/cctbx_project/libtbx/runtime_utils.py", 
> line 55, in __call__
>     result = self.target()
>
>   File 
> "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", 
> line 1769, in __call__
>     identify_ligands = ligand_identification(args=list(self.args), 
> quiet=False)
>
>   File 
> "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", 
> line 308, in __init__
>     ligand_identification.Run(self, params)
>
>   File 
> "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/command_line/ligand_identification.py", 
> line 1454, in Run
>     return self.connections['STOP ']
>
>
> I am not able to identify the problem?
>
> Please let me know if some one can identify the problem, i don't know 
> whether it is a bug or problem in my files.
>
> Thanks for your suggestions in advance.
>
> Rajan
>
>
> -- 
> ************************************************
> Current Address:
>
> Rajan Vyas
> Research Scholar
> Deptt. of Biotechnology
> Panjab University Chandigarh, India
> 160014    Mob. +919417374197
> Fax: +91-172-2625254
> ************************************************
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
>    




More information about the phenixbb mailing list