[phenixbb] low resolution secondary structure refinement
Ralf W. Grosse-Kunstleve
rwgk at cci.lbl.gov
Wed Apr 7 19:54:50 PDT 2010
> I'm not sure to what extent this is true. Ralf, what would be the effect of
> those extra H-bonds when running torsion angle dynamics? Will they be used
> in the rigidity analysis, or will they just behave as they would in
> cartesian dynamics?
The rigidity analysis excludes bonds with a slack != 0; they will
only be maintained as restraints.
All bonds with slack == 0 are treated the same, no matter how they
were defined (cif or custom or any other way).
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